Macromolecular X-ray crystallography (MX) is the most powerful method for structure determination of biological molecules. Last year 91% of all new Protein Data Bank deposits (10,121) were solved using X-rays, and over 90% of these were determined using synchrotron radiation. MX is essential for basic, biomedical and environmental research, drug discovery and biotechnology. In the US, the APS is the largest and the most productive light source for MX. The APS upgrade (APS-U) to a multi-bend achromat (MBA) lattice will deliver the ultimate X-ray source that will radically transform MX capabilities. The brilliant, micron-size, stable X-ray beams will become routinely available to a large number of users at more than a dozen MX stations 24 hrs/day, 200 days/year. Advanced MX methods at APS-U beamlines utilizing microcrystals will allow static, dynamic and time resolved macromolecular studies at unmatched speed and scale, wide range of temperatures (10 – 350 K), providing high-resolution and atomic insight. The APS-U integrated suites of experimental and computational capabilities will examine biological molecules at subnanometer to millimeter length, on time scales from picoseconds to seconds and at different temperatures and pressures. This will make APS-U a powerful one-of-a-kind tool for structural biology. The specific advantages of APS-U X-ray source are (i) highly parallel X-ray beams that will be essential to study large macromolecular complexes at high resolution, (ii) increased brightness that will allow beamlines to deliver intense micrometer sized beams, resulting in a 100-fold improvement in signal-to-noise, (iii) increased brightness at high energy that can be exploited to reduce primary radiation damage due to escape of photoelectrons that cause most of the damage from the X-ray beam footprint, and (iv) high-speed detectors that will allow a reduction of secondary radiation damage at room temperature by using very short exposures to “out-run” free-radical diffusion. The source will also be ideal to exploit macromolecular systems in situ and in cellulo. In a context where new technologies for structure determination emerge, such as free electron lasers and cryo-electron microscopy, this workshop will explore how these future structural biology resources can be used to address grand challenges in biology for predictive understanding of the relationship between the genome, structure, function, and interactions important for research relevant to DOE energy, biological and environmental missions, and NIH human health and well-being missions. |
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MX APS-U Workshop Organizing Committee | ||||||||||||||||
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MX APS-U Workshop Agenda | ||
Argonne National Laboratory, August 20-21, 2018, Bldg. 446 Auditorium |
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Day 1 - August 20 |
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Talks 15 Minutes + Q&As | ||
7:50 – 8:00 AM | Welcome & Workshop Goals | Philippe Noirot |
8:00 – 10:00 AM | Session 1 – Hard X-Rays and Future Trends in Structural Biology | Chairperson: Robert Fischetti and Andrzej Joachimiak |
8:00 - 8:20 | Hard X-Rays at APS-U | Stephen Streiffer, ANL |
8:20 - 8:40 | Serial Millisecond Crystallography at Micro-Focus Monochromatic and Poly-Chromatic Beamlines | Wei Liu, ASU |
8:40 - 9:00 | Serial Crystallography: A New Data Collection Paradigm | Ed Latmann, Hauptman-Woodward MRC |
9:00 - 9:20 | Painting with X-Rays: Flexible Beam Shapes for Optimal Data Quality | James Holton, ALS/LBNL |
9:20 - 10:00 | Discussion | Discussion participant: Gayle Woloschak, Northwestern U. |
10:00 – 10:30 AM | Coffee break | |
10:30 – 12:30 PM | Session 2 – Emerging Technologies |
Chairperson: Todd Yeates |
10:30 – 10:50 | Electric-Field Stimulated Protein Mechanics | Rama Ranganathan, UChicago |
10:50 – 11:10 | Time-Resolved X-Ray Experiments: From the Synchrotron to the XFEL and Back | Michael Thompson, UCSF |
11:10 – 11:30 | Optimizing Serial Crystallography Experiments with Live Diffraction Data Analysis | Artem Lyubimov, SSRL |
11:30 – 11:50 | Challenges in Diffuse X-Ray Scattering from Protein Crystals | Michael Wall, LANL |
11:50 – 12:30 | Discussion | Discussion participants: Jose Rodriguez, UCLA; Aina Cohen, SLAC (remote attendee) |
12:30 – 1:30 PM | Lunch | |
1:30 – 3:30 PM | Session 3 – Future Needs for Structural Biology in Plant, Microbiome and Environmental Sciences | Chairperson: Paul Adams |
1:30 – 1:50 | X-Ray Crystallography and Spectroscopy for Studying Metalloenzymes | Junko Yano, LBNL |
1:50 – 2:10 | Molecular Mechanisms of Biofilm Signaling: Observing Receptors and Enzymes in Action | Holger Sondermann, Cornell |
2:10 – 2:30 | From “Omics” to Function: Deciphering Poorly Annotated Genomes with Structural Biology | Michelle O’Malley, UCSB |
2:30 – 2:50 | Understanding Plant Cell Wall Architecture and Chemistry by Real-Time Imaging | Shi-You Ding, U Michigan |
2:50 – 3:30 | Discussion | Discussion participant: Crysten Blaby-Haas, BNL |
3:30 – 4:00 PM | Coffee Break | |
4:00 – 6:00 PM | Session 4 - Future Needs for Structural Biology in Biomedical and Microbiome Research | Chairperson: Erin Adams |
4:00 – 4:20 | Imaging and Imagining Bacterial Flagella | Eric Sundberg, U Maryland |
4:20 – 4:40 | Synthetic Antibodies and Nanobodies for Structural Biology | Tim Springer, Harvard U. |
4:40 – 5:00 | Membrane Proteins: Reaching for High-Hanging Fruits | Heather Pinkett, Northwestern U. |
5:00 – 5:20 | Microbial Structural Biology | Sean Crosson, UChicago |
5:20 – 6:00 | Discussion | Discussion participant: Engin Ozkan, UChicago |
7:00 PM | Dinner (on your own) | |
Day 2 - August 21 |
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8:00 – 10:00 AM | Session 5 – Future Needs for Structural Biology in Bioenergy and Synthetic Biology Research | Chairperson: Brian Davison |
8:00 - 8:20 | High Throughput Strategies for Enzyme Discovery and Evolution | Carrie Eckert, UC Boulder |
8:20 - 8:40 | Plant Systems Biology Research for Bioenergy Crop Improvement: Progress and Gaps | Udaya Kalluri, ORNL |
8:40 - 9:00 | The Study of Multi-Functional Enzymes Remains Challenging Today | Mike Himmel NREL |
9:00 - 9:20 | Using Neutrons to Probe Biomass and Biomembrane Structures | Brian Davison, ORNL |
9:20 - 10:00 | Discussion | Discussion participant: Ian Blabby, BNL |
10:00 – 10:30 AM | Coffee break | |
10:30 – 12:30 PM | Session 6 – Attendees Discuss and Summarize Workshop Findings | Chairpersons: All committee members |
10:30 – 10:55 | Session 1 - Hard X-Rays and Future Trends in Structural Biology | |
10:55 – 11:20 | Session 2 - Emerging Technologies | |
11:20 – 11:45 | Session 3 - Future Needs for Structural Biology in Plant, Microbiome and Environmental Sciences | |
11:45 – 12:10 | Session 4 - Future Needs for Structural Biology in Bioenergy and Synthetic Biology Research | |
12:10 – 12:35 | Session 5 - Future Needs for Structural Biology in Biomedical and Microbiome Research | |
12:30 – 1:30 PM | Lunch | |
1:30 – 3:30 PM | Report writing | |
4:00 PM | Adjourn |