The Advanced Photon Source
a U.S. Department of Energy Office of Science User Facility

NST Colloquium: Biologically Germane Sensing with Aptamer-Field-Effect Transistors

Type Of Event
Colloquium
Location
440/A105-A106
Building Number
440
Room Number
A105-A106
Speaker
Anne M. Andrews, University of California
Host
Elena Rozhkova
Start Date
02-19-2020
Start Time
11:00 a.m.
Description

Abstract: Detecting small-molecules and other biologically important targets, such as signaling molecules, drugs, toxins, and oligonucleotides, presents unique challenges in complex native environments and at low target concentrations. We developed field-effect transistors (FETs) coupled with nucleic-acid receptors, i.e., aptamers, for sensing in situ. Rare aptamer sequences are identified via solution-phase SELEX thereby circumventing target tethering and epitope masking. Rigorous counter-SELEX against similarly structured metabolites and interferents yields aptamers with high target selectivity. Oligonucleotide libraries are designed for stem closure and adaptive loop-binding upon target recognition. Target-induced conformational rearrangements of stem-loop aptamers are transduced into conductance changes at nanometer-thin In2O3 FET semiconductor surfaces. Portions of the conformational changes in highly negatively charged nucleic acid backbones occur within the Debye length (<1 nm in physiological fluids) to enable direct target quantification over 5-6 orders of magnitude and at concentrations well below aptamer-target dissociation constants. We have demonstrated selective sensing of small-molecule neurotransmitters in brain tissue, e.g., serotonin, dopamine,1-2 and nutrients in blood, e.g., glucose, phenylalanine. Via hybridization, we detect and differentiate single-nucleotide polymorphisms sans amplification. Paths to temporally resolved in vivo sensing and other key applications will be illustrated. Metal-oxide thin-film FETs fabricated via sol-gel processing, chemical-vapor deposition, standard and novel low-cost chemical patterning methods,3-4 and on flexible substrates5 enable multiplexed sensing with wide accessibility and applicability.

 

  1. Kim, J. et al., Fabrication of high-performance ultrathin In2O3 film field-effect transistors and biosensors using chemical lift-off lithography. ACS Nano 2015, 9:4572.
  2. Nakatsuka, N. et al., Aptamer–field-effect transistors overcome Debye length limitations for small-molecule sensing. Science 2018, 362:319.
  3. Liao, W. S. et al., Subtractive patterning via chemical lift-off lithography. Science 2012, 337:1517.
  4. Zhao, C. et al., Large-area, ultrathin metal-oxide semiconductor nanoribbon arrays fabricated by chemical lift-off lithography. Nano Lett. 2018, 18:5590.
  5. Rim, Y. S. et al., Printable ultrathin metal oxide semiconductor-based conformal biosensors. ACS Nano 2015, 9:12174.
     
01.29.2020

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