Entries in the APS Publications Database for the week ending 05.24.2015

This list of entries in the APS Publications Database includes Journal Articles (44), Conference Proceedings (0), Books (0), and Book Chapters (1), and Dissertations (0).

This list of entries in the APS Publications Database does not include abstracts, invited talks, awards, magazine articles, or patents. For the complete list, search the APS Publications Database.

Inquiries about or submissions to the publications database should be directed to apspubs@aps.anl.gov.


Journal Article

Ramkrishna Adhikary, Wayne Yu, Masayuki Oda, Ross C. Walker, Tingjian Chen, Robyn L. Stanfield, Ian A. Wilson, Jörg Zimmermann, Floyd E. Romesberg, Adaptive Mutations Alter Antibody Structure and Dynamics during Affinity Maturation," Biochemistry-US 54 (11), 2085-2093 ( 2015). DOI: 10.1021/bi501417q

Maher Alayyoubi, George P. Leser, Christopher A. Kors, Robert A. Lamb, Structure of the paramyxovirus parainfluenza virus 5 nucleoprotein–RNA complex," Proc. Natl. Acad. Sci. USA 112 (14), E1792-E1799 ( 2015). DOI: 10.1073/pnas.1503941112

J. Baker, R.S. Kumar, D. Sneed, A. Connolly, Y. Zhang, N. Velisavljevic, J. Paladugu, M. Pravica, C. Chen, A. Cornelius, Y. Zhao, Pressure induced structural transitions in CuSbS[subscript 2] and CuSbSe[subscript 2] thermoelectric compounds," J. Alloy Comp. 643 , 186-194 ( 2015). DOI: 10.1016/j.jallcom.2015.04.138

Loren Baugh, Isabelle Phan, Darren W. Begley, Matthew C. Clifton, Brianna Armour, David M. Dranow, Brandy M. Taylor, Marvin M. Muruthi, Jan Abendroth, James W. Fairman, David Fox, III, Shellie H. Dieterich, Bart L. Staker, Anna S. Gardberg, Ryan Choi, Stephen N. Hewitt, Alberto J. Napuli, Janette Myers, Lynn K. Barrett, Yang Zhang, Micah Ferrell, Elizabeth Mundt, Katie Thompkins, Ngoc Tran, Sally Lyons-Abbott, Ariel Abramov, Increasing the structural coverage of tuberculosis drug targets," Tuberculosis 95 (2), 142-148 ( 2015). DOI: 10.1016/j.tube.2014.12.003

Mrinal K. Bera, Mark R. Antonio, Polynuclear Speciation of Trivalent Cations near the Surface of an Electrolyte Solution," Langmuir 31 (19), 5432-5439 ( 2015). DOI: 10.1021/acs.langmuir.5b01354

Dustin E. Bosch, David P. Siderovski, Entamoeba histolytica RacC Selectively Engages p21-Activated Kinase Effectors," Biochemistry-US 54 (2), 404-412 ( 2015). DOI: 10.1021/bi501226f

Jacilynn A. Brant, Danielle M. Massi, N.A.W. Holzwarth, Joseph H. MacNeil, Alexios P. Douvalis, Thomas Bakas, Steve W. Martin, Michael D. Gross, Jennifer A. Aitken, Fast Lithium Ion Conduction in Li[subscript 2]SnS[subscript 3]: Synthesis, Physicochemical Characterization, and Electronic Structure," Chem. Mater. 27 (1), 189-196 ( 2015). DOI: 10.1021/cm5037524

Jeffrey D. Brodin, Evelyn Auyeung, Chad A. Mirkin, DNA-mediated engineering of multicomponent enzyme crystals," Proc. Natl. Acad. Sci. USA 112 (15), 4564-4569 ( 2015). DOI: 10.1073/pnas.1503533112

Peder Cedervall, Ann Aulabaugh, Kieran F. Geoghegan, Thomas J. McLellan, Jayvardhan Pandit, Engineered stabilization and structural analysis of the autoinhibited conformation of PDE4," Proc. Natl. Acad. Sci. USA 112 (12), E1414-E1422 ( 2015). DOI: 10.1073/pnas.1419906112

James W. Checco, Dale F. Kreitler, Nicole C. Thomas, David G. Belair, Nicholas J. Rettko, William L. Murphy, Katrina T. Forest, Samuel H. Gellman, Targeting diverse protein–protein interaction interfaces with [alpha/beta]-peptides derived from the Z-domain scaffold," Proc. Natl. Acad. Sci. USA 112 (15), 4552-4557 ( 2015). DOI: 10.1073/pnas.1420380112

Kenneth D. Clevenger, Rui Wu, Dali Liu, Walter Fast, n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ," Biochemistry-US 53 (42), 6679-6686 ( 2014). DOI: 10.1021/bi501086s

Crystal E. Fagan, Tatsuya Maehigashi, Jack A. Dunkle, Stacey J. Miles, Christine M. Dunham, Structural insights into translational recoding by frameshift suppressor tRNA[superscript SufJ]," RNA 20 , 1944-1954 (14). DOI: 10.1261/rna.046953.114

Gustavo Fenalti, Nadia A. Zatsepin, Cecilia Betti, Patrick Giguere, Gye Won Han, Andrii Ishchenko, Wei Liu, Karel Guillemyn, Haitao Zhang, Daniel James, Dingjie Wang, Uwe Weierstall, John C.H. Spence, Sébastien Boutet, Marc Messerschmidt, Garth J. Williams, Cornelius Gati, Oleksandr M. Yefanov, Thomas A. White, Dominik Oberthuer, Markus Metz, Chun Hong Yoon, Anton Barty, Henry N. Chapman, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Petra Fromme, Dirk Tourwé, Peter W. Schiller, Bryan L. Roth, Steven Ballet, Vsevolod Katritch, Raymond C. Stevens, Vadim Cherezov , Structural basis for bifunctional peptide recognition at human ​[delta]-opioid receptor," Nat. Struct. Mol. Biol. 22 , 265-268 ( 2015). DOI: 10.1038/nsmb.2965

Susan K. Fetics, Hugo Guterres, Bradley M. Kearney, Greg Buhrman, Buyong Ma, Ruth Nussinov, Carla Mattos, Allosteric Effects of the Oncogenic RasQ61L Mutant on Raf-RBD," Structure 23 (3), 505-516 ( 2015). DOI: 10.1016/j.str.2014.12.017

James A. Gilbert, Nancy N. Kariuki, Xiaoping Wang, A. Jeremy Kropf, Kang Yu, Daniel J. Groom, Paulo J. Ferreira, Dane Morgan, Deborah J. Myers, Pt Catalyst Degradation in Aqueous and Fuel Cell Environments studied via In-Operando Anomalous Small-Angle X-ray Scattering," Electrochim. Acta 173 , 223-234 ( 2015). DOI: 10.1016/j.electacta.2015.05.032

Aleksandra Grabowska-Joachimiak, Adam Kula, Tomasz Książczyk, Joanna Chojnicka, Elwira Sliwinska, Andrzej J. Joachimiak, Chromosome landmarks and autosome-sex chromosome translocations in Rumex hastatulus, a plant with XX/XY1Y2 sex chromosome system," Chromosome Res. 23 (2), 187-197 ( 2015). DOI: 10.1007/s10577-014-9446-4

Tae Hee Han, Poorva Dharkar, Mark L. Mayer, Mihaela Serpe, Functional reconstitution of Drosophila melanogaster NMJ glutamate receptors," Proc. Natl. Acad. Sci. USA 112 (19), 6182-6187 ( 2015). DOI: 10.1073/pnas.1500458112

Yue Hao, Patricia M. Blair, Abhishek Sharma, Douglas A. Mitchell, Satish K. Nair, Insights into Methyltransferase Specificity and Bioactivity of Derivatives of the Antibiotic Plantazolicin," ACS Chem. Biol. 10 (5), 1209-1216 ( 2015). DOI: 10.1021/cb501042a

Patrick E. Hartnett, Amod Timalsina, H.S.S. Ramakrishna Matte, Nanjia Zhou, Xugang Guo, Wei Zhao, Antonio Facchetti, Robert P.H. Chang, Mark C. Hersam, Michael R. Wasielewski, Tobin J. Marks, Slip-Stacked Perylenediimides as an Alternative Strategy for High Efficiency Nonfullerene Acceptors in Organic Photovoltaics," J. Am. Chem. Soc. 136 (46), 16345-16356 ( 2014). DOI: 10.1021/ja508814z

Bradley M. Hover, Nam K. Tonthat, Maria A. Schumacher, Kenichi Yokoyama, Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis," Proc. Natl. Acad. Sci. USA 112 (20), 6347-6352 ( 2015). DOI: 10.1073/pnas.1500697112

Xiaoli Huang, Fangfei Li, Qiang Zhou, Gang Wu, Yanping Huang, Lu Wang, Bingbing Liu, Tian Cui, In situ synchrotron X-ray diffraction with laserheated diamond anvil cells study of Pt up to 95 GPa and 3150 K," RSC Adv. 5 (19), 14603-14609 (15). DOI: 10.1039/c4ra12769b

Y. Ivanyushenkov, K. Harkay, M. Abliz, L. Boon, M. Borland, D. Capatina, J. Collins, G. Decker, R. Dejus, J. Dooling, C. Doose, L. Emery, J. Fuerst, J. Gagliano, Q. Hasse, M. Jaski, M. Kasa, S.H. Kim, R. Kustom, J.C. Lang, J. Liu, E. Moog, D. Robinson, V. Sajaev, K. Schroeder, N. Sereno, Y. Shiroyanagi, D. Skiadopoulos, M. Smith, X. Sun, E. Trakhtenberg, I. Vasserman, A. Vella, A. Xiao, J. Xu, A. Zholents, E. Gluskin, Development and operating experience of a short-period superconducting undulator at the Advanced Photon Source," Phys. Rev. Spec. Top., Accel. Beams 18 (4), 040703-1-040703-13 ( 2015). DOI: 10.1103/PhysRevSTAB.18.040703

Jaime L. Jensen, Venkata S.K. Indurthi, David B. Neau, Stefan W. Vetter, Christopher L. Colbert, Structural insights into the binding of the human receptor for advanced glycation end products (RAGE) by S100B, as revealed by an S100B-RAGE-derived peptide complex," Acta Crystallogr. D 71 (5), 1176-1183 ( 2015). DOI: 10.1107/S1399004715004216

Kotaro Kelley, Kevin E Knockenhauer, Greg Kabachinski, Thomas U Schwartz, Atomic structure of the Y complex of the nuclear pore," Nat. Struct. Mol. Biol. 22 , 425-431 ( 2015). DOI: 10.1038/nsmb.2998

S. Jordan Kerns, Roman V. Agafonov, Young-Jin Cho, Francesco Pontiggia, Renee Otten, Dimitar V. Pachov, Steffen Kutter, Lien A. Phung, Padraig N. Murphy, Vu Thai, Tom Alber, Michael F. Hagan, Dorothee Kern , The energy landscape of ​adenylate kinase during catalysis," Nat. Struct. Mol. Biol. 22 , 124-131 ( 2015). DOI: 10.1038/nsmb.2941

Leopold Kong, Ian A. Wilson, Peter D. Kwong, Crystal structure of a fully glycosylated HIV-1 gp120 core reveals a stabilizing role for the glycan at Asn262," Proteins 83 (3), 590-596 ( 2015). DOI: 10.1002/prot.24747

T. Li, D. Fan, L. Lu, J.Y. Huang, J.C. E, F. Zhao, M.L. Qi, T. Sun, K. Fezzaa, X.H. Xiao, X.M. Zhou, T. Suo, W. Chen, Y.L. Li, M.H. Zhu, S.N. Luo, Dynamic fracture of C/SiC composites under high strain-rate loading: microstructures and mechanisms," Carbon 91 , 468-478 ( 2015). DOI: 10.1016/j.carbon.2015.05.015

Yan-Ling Li, Sheng-Nan Wang, Artem R. Oganov, Huiyang Gou, Jesse S. Smith, Timothy A. Strobel, Investigation of exotic stable calcium carbides using theory and experiment," Nat. Commun. 6 , 6974-1-6974-9 ( 2015). DOI: 10.1038/ncomms7974

Vincent C. Luca, Kevin M. Jude, Nathan W. Pierce, Maxence V. Nachury, Suzanne Fischer, K. Christopher Garcia, Structural basis for Notch1 engagement of Delta-like 4," Science 347 , 847-853 ( 2015). DOI: 10.1126/science.1261093

Kelly A. Manthei, Morgan C. Hill, Jordan E. Burke, Samuel E. Butcher, James L. Keck, Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases," Proc. Natl. Acad. Sci. USA 112 (14), 4292-4297 ( 2015). DOI: 10.1073/pnas.1416746112

Francesco Femi Marafatto, Matthew L. Strader, Julia Gonzalez-Holguera, Adam Schwartzberg, Benjamin Gilbert, Jasquelin Peña, Rate and mechanism of the photoreduction of birnessite (MnO[subscript 2]) nanosheets," Proc. Natl. Acad. Sci. USA 112 (15), 4600-4605 ( 2015). DOI: 10.1073/pnas.1421018112

Ellene H. Mashalidis, Apostolos G. Gittis, Aurelie Tomczak, Chris Abell, Clifton E. Barry, III, David N. Garboczi, Molecular insights into the binding of coenzyme F[subscript 420] to the conserved protein Rv1155 from Mycobacterium tuberculosis," Protein Sci. 24 (5), 729-740 ( 2015). DOI: 10.1002/pro.2645

Li-Zhi Mi, Christopher T. Brown, Yijie Gao, Yuan Tian, Viet Q. Le, Thomas Walz, Timothy A. Springer, Structure of bone morphogenetic protein 9 procomplex," Proc. Natl. Acad. Sci. USA 112 (12), 3710-3715 ( 2015). DOI: 10.1073/pnas.1501303112

Katarina Moravcevic, Diego Alvarado, Karl R. Schmitz, Jon A. Kenniston, Jeannine M. Mendrola, Kathryn M. Ferguson, Mark A. Lemmon, Comparison of Saccharomyces cerevisiae F-BAR Domain Structures Reveals a Conserved Inositol Phosphate Binding Site," Structure 23 (2), 352-363 ( 2015). DOI: 10.1016/j.str.2014.12.009

Elwood A. Mullins, Rongxin Shi, Lyle A. Kotsch, Brandt F. Eichman, A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases," PLoS One 10 (5), e0127733-1-e0127733-13 ( 2015). DOI: 10.1371/journal.pone.0127733

Devkumar Mustafi, Jesse Ward, Urszula Dougherty, Marc Bissonnette, John Hart, Stefan Vogt, Gregory S. Karczmar, X-Ray Fluorescence Microscopy Demonstrates Preferential Accumulation of a Vanadium-Based Magnetic Resonance Imaging Contrast Agent in Murine Colonic Tumors," Mol. Imaging 14 , 1535-1-1535-12 ( 2015). DOI: 10.2310/7290.2015.00001

Y. Nguyen, Nam X. Nguyen, Jamie L. Rogers, Jun Liao, John B. MacMillan, Youxing Jiang, Vanessa Sperandio, Structural and Mechanistic Roles of Novel Chemical Ligands on the SdiA Quorum-Sensing Transcription Regulator," mBio 6 (2), e02429-1-e02429-14 ( 2015). DOI: 10.1128/mBio.02429-14

Aaron D. Pearson, Jeremy H. Mills, Yifan Song, Fariborz Nasertorabi, Gye Won Han, David Baker, Raymond C. Stevens, Peter G. Schultz, Trapping a transition state in a computationally designed protein bottle," Science 347 , 863-867 ( 2015). DOI: 10.1126/science.aaa2424

Robyn L. Stanfield, Cristina De Castro, Alberto M. Marzaioli, Ian A. Wilson, Ralph Pantophlet, Crystal structure of the HIV neutralizing antibody 2G12 in complex with a bacterial oligosaccharide analog of mammalian oligomannose," Glycobiology 25 (4), 412-419 (15). DOI: 10.1093/glycob/cwu123

Andrew C.-H. Sue, Ranjan V. Mannige, Hexiang Deng, Dennis Cao, Cheng Wang, Felipe Gándara, J. Fraser Stoddart, Stephen Whitelam, Omar M. Yaghi, Heterogeneity of functional groups in a metal–organic framework displays magic number ratios," Proc. Natl. Acad. Sci. USA 112 (18), 5591-5596 ( 2015). DOI: 10.1073/pnas.1416417112

Netanel Tzarum, Robert P. de Vries, Xueyong Zhu, Wenli Yu, Ryan McBride, James C. Paulson, Ian A. Wilson, Structure and Receptor Binding of the Hemagglutinin from a Human H6N1 Influenza Virus," Cell Host Microbe 17 (3), 369-376 ( 2015). DOI: 10.1016/j.chom.2015.02.005

La-Chin Wu, Morten Bormann Nielsen, Martin Bremholm, Solveig Rogild Madsen, Jacob Overgaard, Matt Newville, Yu-Sheng Chen, Bo Brummerstedt Iversen, High pressure induced charge transfer in 3d–4f bimetallic photomagnetic materials," Chem. Commun. 51 (42), 8868-8871 (15). DOI: 10.1039/c5cc00603a

Ke Yuan, Eugene S. Ilton, Mark R. Antonio, Zhongrui Li, Peter J. Cook, Udo Becker, Electrochemical and Spectroscopic Evidence on the One-Electron Reduction of U(VI) to U(V) on Magnetite," Environ. Sci. Technol. 49 (10), 6206-6213 ( 2015). DOI: 10.1021/acs.est.5b00025

Helen Y. Zou, Qiuhua Li, Lars D. Engstrom, Melissa West, Vicky Appleman, Katy A. Wong, Michele McTigue, Ya-Li Deng, Wei Liu, Alexei Brooun, Sergei Timofeevski, Scott R.P. McDonnell, Ping Jiang, Matthew D. Falk, Patrick B. Lappin, Timothy Affolter, Tim Nichols, Wenyue Hu, Justine Lam, Ted W. Johnson, Tod Smeal, Al Charest, Valeria R. Fantin, PF-06463922 is a potent and selective next-generation ROS1/ALK inhibitor capable of blocking crizotinib-resistant ROS1 mutations," Proc. Natl. Acad. Sci. USA 112 (11), 3493-3498 ( 2015). DOI: 10.1073/pnas.1420785112

Total Journal Articles: 44


Conference Proceedings

Total Conference Proceedings: 0


Book

Total Books: 0


Book Chapter

Bo Y. Baker, Sahil Gulati, Wuxian Shi, Benlian Wang, Phoebe L. Stewart, Krzysztof Palczewski, "Methods in Enzymology," Crystallization of Proteins from Crude Bovine Rod Outer Segments ScienceDirect N/A 2015 Arun K. Shukla, eds.

Total Book Chapters: 1


Dissertation

Total Dissertations: 0